Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3144875_3145600_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3144875 - 3145600

Intron Length:

726

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

TAAATAGTAATG

Flanking Amino Acid:

SPTDASKKHKRTLYAVMVLS

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

89.9

0.9

0.6

84.8

22.8

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

41.9

-0.7

2.1

46.99

39.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008823

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009180

3141521 - 3146557

5037