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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3145997_3146293_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3145997 - 3146293
Intron Length:
297

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CATTTCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTACAATACTC
Flanking Amino Acid:
HPDFRKGVQQKDGRKNTNRS
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
75.1
35.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.1
0.84
0.7
84.7
29.7
Minor 5ss
29.8
-2.3
3.3
37.5
47.2
Minor BPS
46.4
-0.3
2.1
65.43
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008823
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009180
3141521 - 3146557
5037