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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3156167_3157182_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3156167 - 3157182
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACGGC
5'SS Class:
major
3'SS Sequence:
TTCTTGTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTGAC
U12 Branch Point Sequence:
TTCTTGTCCACA
Flanking Amino Acid:
DAEKSRIPQEVYFQQKITEY
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
63.9
41.2
Major BPS
56.2
0.15
1.3
48.8
46.3
Major PPT
80.9
0.7
0.8
75.8
32.8
Minor 5ss
36
-1.6
3.4
50.2
46.4
Minor BPS
43.8
-0.5
2.5
62.43
44.3

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022