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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3157951_3158716_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3157951 - 3158716
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CGTTGCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
AATTAATGAGCC
Flanking Amino Acid:
DLCKGKIIRAVGDEEEILPI
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.8
0.65
0.9
69.1
41.8
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
44.3
-0.4
2
58.07
39.5

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022