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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3161516_3161598_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3161516 - 3161598
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGACG
5'SS Class:
major
3'SS Sequence:
CTGCCTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
AGGGGTTTGACG
Flanking Amino Acid:
CLGCFGLFSKILDEVEKRRQ
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
70.6
0.46
0.8
61.7
34.9
Minor 5ss
31.2
-2.2
3.3
39.9
45.9
Minor BPS
44.5
-0.5
1.9
44.54
42.1

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022