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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3161677_3162060_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3161677 - 3162060
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCATC
5'SS Class:
major
3'SS Sequence:
CATCCTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
GGTGCTCCAACC
Flanking Amino Acid:
RKIGYCRRLLPSGRGVCLPE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
0.9
74
36.6
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.7
0.65
0.8
69.3
36.5
Minor 5ss
38.6
-1.3
3
48.9
41.6
Minor BPS
45.9
-0.3
1.9
57
41.3

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022