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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3162131_3162242_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3162131 - 3162242
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCCGCG
5'SS Class:
major
3'SS Sequence:
TCCCTCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CCGTCCCCATGC
Flanking Amino Acid:
NNWAPVTDFTSETFSFVLTN
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64
0.33
1.3
51.7
45.5
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
82.1
0.72
0.7
76.3
25.7
Minor 5ss
41.1
-1
3.4
56.7
47.5
Minor BPS
37.6
-0.9
2.1
42.57
44.6

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022