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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3162356_3162653_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3162356 - 3162653
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAGC
5'SS Class:
major
3'SS Sequence:
CACTTTGTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAC
U12 Branch Point Sequence:
ATCACCCTGACT
Flanking Amino Acid:
EPKITYQFPKRENLLRGQKE
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.7
39.5
Major BPS
49.2
-0
1.3
53.6
41.6
Major PPT
77.2
0.61
0.9
68.5
41.8
Minor 5ss
42.2
-0.9
2.5
55
42.2
Minor BPS
58
0.33
1.8
75.4
41

Associated Gene:

Gene:
DENND2D
Ensembl Gene ID:
ENSAPLG00000003672
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003765
3154921 - 3165942
11022