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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3184665_3184759_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3184665 - 3184759
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGCACA
5'SS Class:
major
3'SS Sequence:
TTTCCCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CAACCTTTCACT
Flanking Amino Acid:
TVQKSDKKSGKWFTALERCT
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
67.6
39.4
Major BPS
77.7
0.69
1
81
30.2
Major PPT
83.3
0.75
0.7
81.1
23.9
Minor 5ss
33.8
-1.8
2.8
32.8
41.8
Minor BPS
52.7
0.16
1.8
67.27
43.3

Associated Gene:

Gene:
MYBPH
Ensembl Gene ID:
ENSAPLG00000002403
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002457
3177612 - 3186322
8711