Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3226483_3226900_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3226483 - 3226900

Intron Length:

418

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCGGTCAC

5'SS Class:

major

3'SS Sequence:

GATTTGCTTCCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

TGCTCTTTGATT

Flanking Amino Acid:

SAPAKKMPPEVGASGSPRLE

Intron Amino Acid Position:

1162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.8

0.47

1.3

63.2

43.4

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

76.3

0.59

66.1

44.9

Minor 5ss

28.5

-2.5

2.9

35.1

41.4

Minor BPS

70.9

0.74

1.2

79.21

37.5

Associated Gene:

Gene:

PPFIA4

Ensembl Gene ID:

ENSAPLG00000014630

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030815

3224762 - 3251186

26425

ENSAPLT00000015344

3224762 - 3251186

26425

ENSAPLT00000043286

3225508 - 3251849

26342

ENSAPLT00000035113

3225508 - 3251849

26342