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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3229109_3229743_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3229109 - 3229743
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
CCCTCCTGAAGG
Flanking Amino Acid:
VHLKMVDSFHRTSLQYGIMC
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.7
35.1
Major BPS
69.6
0.49
1
59.5
39
Major PPT
80.4
0.68
0.9
73.7
36.9
Minor 5ss
29
-2.4
3.1
36.8
40.4
Minor BPS
49.1
-0.2
1.9
51.42
48.7

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425