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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3231874_3232431_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3231874 - 3232431
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGACCAT
U12 Branch Point Sequence:
TCACCCTGACCA
Flanking Amino Acid:
SPSAPPTSRTSSGNVWVTHE
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
50.4
0.01
1.4
60.8
45.4
Major PPT
89.3
0.88
0.6
81.8
30.2
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
51.2
0.03
1.8
62.79
43

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425