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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3232633_3233254_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3232633 - 3233254
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAGTCAC
U12 Branch Point Sequence:
CTGGCAGTCACC
Flanking Amino Acid:
DGPTVVSWLELWVGMPAWYV
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
54.8
0.12
1.2
58.7
38.1
Major PPT
75.1
0.57
1
72
38
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
39
-0.8
2.5
50.47
46.4

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425