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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3233337_3233578_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3233337 - 3233578
Intron Length:
242

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CCGTTCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATAAA
U12 Branch Point Sequence:
CTCCCAATAAAC
Flanking Amino Acid:
QAEKDRRLRKKHELLEEARR
Intron Amino Acid Position:
805

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
58.5
0.21
1.1
59.9
32.5
Major PPT
67.1
0.39
0.9
59.3
37
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
45
-0.4
1.9
55.52
42

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342