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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3234296_3234437_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3234296 - 3234437
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTCCATCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAG
U12 Branch Point Sequence:
CCCTCCTCCATC
Flanking Amino Acid:
HPALSQEDGKSSLEEQASNP
Intron Amino Acid Position:
719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
77.5
32.8
Major BPS
49.8
-0
1.5
59.3
39.1
Major PPT
70.8
0.47
0.8
61.5
33.8
Minor 5ss
26.6
-2.7
3
31.8
42.6
Minor BPS
47
-0.2
2
53.52
45

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425