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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3234572_3235358_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3234572 - 3235358
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
TGTGCTTGTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTCAT
U12 Branch Point Sequence:
AGCCGCCCAACC
Flanking Amino Acid:
DLDRMGIMTLSPAARDESRE
Intron Amino Acid Position:
684

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.2
43.8
Major BPS
73.5
0.58
1
73.6
32.5
Major PPT
75.5
0.57
1
73.1
42.1
Minor 5ss
26.4
-2.7
2.9
27.5
37.7
Minor BPS
40.5
-0.7
2.1
48.37
40.8

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043286
3225508 - 3251849
26342