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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3235600_3236083_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3235600 - 3236083
Intron Length:
484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGGCC
5'SS Class:
major
3'SS Sequence:
ACTCCTCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CACTCCTCCACC
Flanking Amino Acid:
EQLDAINEEIRMIQEEKEST
Intron Amino Acid Position:
582

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.6
0.44
1.1
62.7
37.7
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
67.8
0.4
0.9
59.7
36.2
Minor 5ss
29.2
-2.4
3.7
41.9
45.1
Minor BPS
49.3
-0
2
59.47
45.5

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342