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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3236290_3236549_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3236290 - 3236549
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCCAG
5'SS Class:
major
3'SS Sequence:
TTGTTCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTGGAC
U12 Branch Point Sequence:
GACCAGTGGACC
Flanking Amino Acid:
FAARREEPAKDWEQAQAGSV
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.2
59.7
46.7
Major BPS
45.1
-0.3
1.4
40.5
41.4
Major PPT
78.3
0.64
0.8
70.3
36.3
Minor 5ss
42.8
-0.8
3
55.8
48.4
Minor BPS
38
-0.9
2.1
42.87
37.5

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425