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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3236692_3238664_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3236692 - 3238664
Intron Length:
1973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTGCAC
U12 Branch Point Sequence:
GTGTCCACAGCA
Flanking Amino Acid:
SGTFVESVHTRSHMGSATDL
Intron Amino Acid Position:
466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.8
72.1
31.2
Major BPS
52.8
0.07
1.4
66.7
39.9
Major PPT
80.6
0.69
0.7
73
31.9
Minor 5ss
26.3
-2.7
3.1
33.4
42
Minor BPS
46.9
-0.2
2
61.9
43.7

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342