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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3241496_3241606_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3241496 - 3241606
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGAG
5'SS Class:
major
3'SS Sequence:
CCCTGTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GAGTCAC
U12 Branch Point Sequence:
GGTGCCAGGAGT
Flanking Amino Acid:
LANKESLHRQCEEKARHLQE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55
44.1
Major BPS
49.7
-0
1.3
55.1
42.1
Major PPT
70.9
0.47
0.8
64.6
30.9
Minor 5ss
33
-1.9
3.7
46
49.3
Minor BPS
41.9
-0.5
2.1
58.61
44.1

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043286
3225508 - 3251849
26342
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425