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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3241754_3242176_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3241754 - 3242176
Intron Length:
423

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGGCGC
5'SS Class:
major
3'SS Sequence:
ATCGCTTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
ACAGCCCCATCG
Flanking Amino Acid:
SSKYQRDLREALAQKEDMEE
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.2
59.9
44.9
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
70.9
0.47
0.9
61.8
39.3
Minor 5ss
27.5
-2.6
3
34.1
41.5
Minor BPS
38.6
-1
2
39.6
43.6

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342