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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3244188_3251039_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3244188 - 3251039
Intron Length:
6852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTGCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TCCCAGCTAACG
Flanking Amino Acid:
QRQLNSALPQEFATLTRELS
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
81.4
32.1
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
74.5
0.55
0.8
69
31.5
Minor 5ss
32.5
-2
3.1
40.7
45.3
Minor BPS
39.9
-0.9
2.4
46.31
45.9

Associated Gene:

Gene:
PPFIA4
Ensembl Gene ID:
ENSAPLG00000014630
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035113
3225508 - 3251849
26342
ENSAPLT00000030815
3224762 - 3251186
26425
ENSAPLT00000015344
3224762 - 3251186
26425
ENSAPLT00000043286
3225508 - 3251849
26342