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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3297051_3297645_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3297051 - 3297645
Intron Length:
595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCTTTCCATT
Flanking Amino Acid:
QPLHNEEENEDAHSLAAAPT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
79.5
0.66
0.8
74.4
29.1
Minor 5ss
28.9
-2.4
3.3
37.6
47.1
Minor BPS
48.2
-0
1.9
72.72
39

Associated Gene:

Gene:
TMEM9
Ensembl Gene ID:
ENSAPLG00000022254
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026169
3294597 - 3299377
4781