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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3298360_3298778_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3298360 - 3298778
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTGTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGTTGCTGATCT
Flanking Amino Acid:
IYNKNVSQKDCNCLHVVEPM
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71
35.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
78.3
0.64
0.9
72
38
Minor 5ss
35.2
-1.7
2.8
40.6
40.8
Minor BPS
52.1
0.14
2.2
77.81
44.1

Associated Gene:

Gene:
TMEM9
Ensembl Gene ID:
ENSAPLG00000022254
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026169
3294597 - 3299377
4781