Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3326049_3328142_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3326049 - 3328142

Intron Length:

2094

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGATTC

5'SS Class:

strong_major

3'SS Sequence:

CCTCTTTCAAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TCTTCAATAACT

Flanking Amino Acid:

RKPVTLTLQEGKNAIFRAVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.8

81.1

26.4

Major BPS

77.9

0.69

0.8

75.9

Major PPT

65.1

0.34

67.3

31.5

Minor 5ss

37.1

-1.5

3.2

49.9

46.6

Minor BPS

65.7

0.57

1.9

86.43

39.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014322

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014928

3305400 - 3348674

43275