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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3330765_3331535_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3330765 - 3331535
Intron Length:
771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTAAGCCTC
5'SS Class:
major
3'SS Sequence:
CCCTGTTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
AAATTCTTGATT
Flanking Amino Acid:
LQDLRKLLRKRAPAPKQKTI
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
67.4
44
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
66
0.36
1
69.8
34.3
Minor 5ss
42.9
-0.8
3.1
60.8
43.7
Minor BPS
67.1
0.62
1.1
74.29
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019066
3327118 - 3339096
11979
ENSAPLT00000014928
3305400 - 3348674
43275