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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3332419_3333024_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3332419 - 3333024
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTACTCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTGTCTTTAAGA
Flanking Amino Acid:
NSNSKIYVLKDGERLRYGTG
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
76.4
0.59
0.8
69.7
36.4
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
72
0.69
1.6
78.71
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019066
3327118 - 3339096
11979
ENSAPLT00000014928
3305400 - 3348674
43275