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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3338766_3338956_F

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3338766 - 3338956
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTGGACACTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CTTTTCTGGACA
Flanking Amino Acid:
RRQYRLDDLRAPRCHVNKQL
Intron Amino Acid Position:
1619

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
85.4
31.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
59.2
0.21
1
55.7
39.5
Minor 5ss
37.6
-1.4
3.6
57.9
46.7
Minor BPS
65.4
0.48
1.5
74.52
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019066
3327118 - 3339096
11979
ENSAPLT00000014928
3305400 - 3348674
43275