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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3339082_3339861_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3339082 - 3339861
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTAAGC
Flanking Amino Acid:
TGTWFKDGLKLTSMEGVIFE
Intron Amino Acid Position:
1661

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.1
0.81
0.7
81.8
29.8
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
64.5
0.43
1.9
79.01
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014928
3305400 - 3348674
43275