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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3340832_3341436_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3340832 - 3341436
Intron Length:
605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCC
5'SS Class:
strong_major
3'SS Sequence:
TTCATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTGTGTTCATCT
Flanking Amino Acid:
LDIDLKVEVTDKPQPPAGPL
Intron Amino Acid Position:
1807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
72.5
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
86.6
0.82
0.7
84.5
30.3
Minor 5ss
33.2
-1.9
3.1
43.3
43.8
Minor BPS
47.6
-0.1
2.2
71.59
45.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014928
3305400 - 3348674
43275