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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3341737_3342112_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3341737 - 3342112
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATCTGCTAATA
Flanking Amino Acid:
ESEEVKAVSKATPGAPDPPE
Intron Amino Acid Position:
1907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
80
0.75
1
78.6
31
Major PPT
85.4
0.8
0.8
77
37.2
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
45.9
-0.3
2.2
62.31
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014928
3305400 - 3348674
43275