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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3342287_3342885_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3342287 - 3342885
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTTTTCATTC
Flanking Amino Acid:
WVPVNSVPIADKKLKMTDLK
Intron Amino Acid Position:
1965

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
34.7
-1.7
3
45.3
42.8
Minor BPS
48.8
-0.1
1.7
61.35
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014928
3305400 - 3348674
43275