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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3343015_3343506_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3343015 - 3343506
Intron Length:
492

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TTTATCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATAGTTTAAAT
Flanking Amino Acid:
SQPVFARDSTKPPGQVRDLA
Intron Amino Acid Position:
2008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.3
34.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
90.7
0.92
0.7
88.8
28
Minor 5ss
33.3
-1.9
3.2
36.5
41.7
Minor BPS
51.2
0.12
1.9
69.72
40.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014322
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014928
3305400 - 3348674
43275