About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3362659_3369121_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3362659 - 3369121
Intron Length:
6463

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGCCC
5'SS Class:
major
3'SS Sequence:
TTTCCATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATTTACA
Flanking Amino Acid:
VSSSVGHSNRGSMYDCIADG
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.2
62.2
41.1
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
86.5
0.82
0.7
80.5
30.3
Minor 5ss
37.6
-1.4
3.3
51.7
45
Minor BPS
61.8
0.37
1.9
78.78
36.7

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000