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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3369223_3377879_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3369223 - 3377879
Intron Length:
8657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTTGATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
CTTTCCTGATTT
Flanking Amino Acid:
QTGNSNWGYPLYNGTLKRDV
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
69.7
37.9
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
73.5
0.53
1
73.7
40.6
Minor 5ss
44.6
-0.6
2.9
59.7
45.1
Minor BPS
62.8
0.48
1.8
80.66
41.5

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000