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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3378305_3386289_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3378305 - 3386289
Intron Length:
7985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTAACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAA
U12 Branch Point Sequence:
TTCTCTTTAACA
Flanking Amino Acid:
VVYGQTHSSSRICGDEIDGG
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.8
81.8
38.5
Major BPS
74.7
0.61
1
65.9
40.9
Major PPT
69.6
0.44
0.9
65.7
33.7
Minor 5ss
37.8
-1.4
3
49.5
46.7
Minor BPS
85.2
1.1
1
86.93
31.8

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000