About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3388379_3389063_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3388379 - 3389063
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGAC
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
GCATGGTGACCT
Flanking Amino Acid:
GNTEIQKQLTGLLWNLSSTD
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76
33.9
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
73.1
0.52
0.8
65.4
36.1
Minor 5ss
31.9
-2.1
3.3
43
44.6
Minor BPS
37.8
-0.8
2.5
53.99
47

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000