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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3389242_3391313_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3389242 - 3391313
Intron Length:
2072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
CGGCTCTCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CCTTCCTGACGT
Flanking Amino Acid:
EVFFNATGCLRNLSSADMGR
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.7
83.1
30.9
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
73.3
0.52
0.9
69.4
36.9
Minor 5ss
30.4
-2.2
2.9
40.4
45.7
Minor BPS
48.7
-0
2.1
68.08
48.5

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000