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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3392362_3392464_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3392362 - 3392464
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CATCTCTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATCT
Flanking Amino Acid:
CFNSRSGKMENDEYGVPLPE
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.4
0.64
0.8
73.3
31.2
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
54.3
0.21
1.8
72.93
43.9

Associated Gene:

Gene:
PKP1
Ensembl Gene ID:
ENSAPLG00000013591
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014162
3362457 - 3400456
38000