About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3423379_3423739_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3423379 - 3423739
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAC
U12 Branch Point Sequence:
CTTTTCTGCACT
Flanking Amino Acid:
NIDHLSEDKLRDKAKELWQT
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
73
38.2
Major BPS
56.9
0.17
1.1
59.7
36.1
Major PPT
77.3
0.61
0.7
71.8
26.5
Minor 5ss
25.5
-2.8
3.5
37.8
47.1
Minor BPS
58.4
0.34
2
80.07
42.1

Associated Gene:

Gene:
TNNT2
Ensembl Gene ID:
ENSAPLG00000012741
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013323
3421420 - 3429662
8243