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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3423850_3424244_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3423850 - 3424244
Intron Length:
395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGATCC
5'SS Class:
major
3'SS Sequence:
ATGGCTTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
GTTTCCTTCCCT
Flanking Amino Acid:
MLHFGGYMQKSEKKGGKKQT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
65.8
34.7
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
73.2
0.52
1
66.3
40.1
Minor 5ss
32.7
-2
3.2
42.6
44.4
Minor BPS
47.5
-0.1
3.6
84.57
42.1

Associated Gene:

Gene:
TNNT2
Ensembl Gene ID:
ENSAPLG00000012741
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013323
3421420 - 3429662
8243