Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3424356_3424534_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3424356 - 3424534

Intron Length:

179

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTCTT

5'SS Class:

major

3'SS Sequence:

CTAACCCTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCTAAC

U12 Branch Point Sequence:

CCCTCCTGACCC

Flanking Amino Acid:

REKERQARMAEERARKEEEE

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.9

0.4

1.3

69.1

43.2

Major BPS

69.4

0.48

1.1

69.6

35.5

Major PPT

63.6

0.31

58.2

Minor 5ss

36.6

-1.5

3.2

54.8

42.5

Minor BPS

50.2

-0

1.8

58.45

46.5

Associated Gene:

Gene:

TNNT2

Ensembl Gene ID:

ENSAPLG00000012741

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013323

3421420 - 3429662

8243