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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3425969_3426238_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3425969 - 3426238
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TGGGGACCCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CACTAAC
U12 Branch Point Sequence:
TTCCTGGGGACC
Flanking Amino Acid:
EGDREQEPGEGESKPKPKPF
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.7
37
Major BPS
64.5
0.36
1
65.2
28.2
Major PPT
56.6
0.15
1
47
40.7
Minor 5ss
27
-2.6
3.3
37.6
47.1
Minor BPS
36.8
-1
2.5
50.93
40.4

Associated Gene:

Gene:
TNNT2
Ensembl Gene ID:
ENSAPLG00000012741
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013323
3421420 - 3429662
8243