Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3433124_3433240_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3433124 - 3433240

Intron Length:

117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGATGTG

5'SS Class:

major

3'SS Sequence:

CTTTCTCTTCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAC

U12 Branch Point Sequence:

TGTTTTTCACTT

Flanking Amino Acid:

QPRDAPAGTKLQ*

Intron Amino Acid Position:

418

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

69.5

41.5

Major BPS

90.1

0.99

0.7

91.6

20.3

Major PPT

88.6

0.87

0.7

80.8

31.2

Minor 5ss

34.3

-1.8

3.6

48.2

47.9

Minor BPS

50.8

0.1

1.8

71.95

39.8

Associated Gene:

Gene:

LAD1

Ensembl Gene ID:

ENSAPLG00000021537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043273

3432018 - 3438021

6004

ENSAPLT00000018153

3432018 - 3443265

11248