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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3433124_3434328_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3433124 - 3434328
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCAGCT
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGTTTTTCACTT
Flanking Amino Acid:
QEPAKEEKSKLQ*
Intron Amino Acid Position:
392

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
63.6
41.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
37.5
-1.4
3.6
57.4
46.7
Minor BPS
50.8
0.1
1.8
71.95
39.8

Associated Gene:

Gene:
LAD1
Ensembl Gene ID:
ENSAPLG00000021537
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020905
3432018 - 3443265
11248