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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3434902_3435244_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3434902 - 3435244
Intron Length:
343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGAAA
5'SS Class:
major
3'SS Sequence:
TCTCTCCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CTGCTCACAGCC
Flanking Amino Acid:
KLEKYTSAVQRSGSVRSSVT
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
66
41.4
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
80.9
0.7
0.7
72.9
31.9
Minor 5ss
36
-1.6
3.3
48.2
47.5
Minor BPS
40.7
-0.7
1.9
48.65
41.2

Associated Gene:

Gene:
LAD1
Ensembl Gene ID:
ENSAPLG00000021537
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043273
3432018 - 3438021
6004
ENSAPLT00000020905
3432018 - 3443265
11248
ENSAPLT00000018153
3432018 - 3443265
11248