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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3436678_3436881_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3436678 - 3436881
Intron Length:
204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAGAT
U12 Branch Point Sequence:
GGTGCATCAGAT
Flanking Amino Acid:
SEGTPSPDQQHPPRSPLKEV
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
65.3
0.38
1
60.7
37.6
Major PPT
82.2
0.73
0.8
80.6
31.5
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
40.7
-0.6
2
56.95
44.5

Associated Gene:

Gene:
LAD1
Ensembl Gene ID:
ENSAPLG00000021537
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043273
3432018 - 3438021
6004
ENSAPLT00000020905
3432018 - 3443265
11248
ENSAPLT00000018153
3432018 - 3443265
11248