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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3451278_3451590_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
3451278 - 3451590
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCCCAC
U12 Branch Point Sequence:
TTCTGCCCCACT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
42.9
-0.4
1.3
46
38.7
Major PPT
81.6
0.71
0.7
77.1
24.9
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
42.5
-0.5
2.5
68.62
47.8

Associated Gene:

Gene:
TNNI1
Ensembl Gene ID:
ENSAPLG00000021735
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042967
3450278 - 3454610
4333