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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3453308_3453764_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3453308 - 3453764
Intron Length:
457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCAGC
5'SS Class:
major
3'SS Sequence:
CCTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGCAA
U12 Branch Point Sequence:
AAGGCAGTGACC
Flanking Amino Acid:
EAKCNHNTREIKDLKIKVLD
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.1
67.1
44.6
Major BPS
50.7
0.02
1.5
63.4
44.3
Major PPT
74.6
0.55
0.7
68.7
24.9
Minor 5ss
38.3
-1.3
3.1
51.6
45.2
Minor BPS
41.6
-0.6
2.2
49.65
40.9

Associated Gene:

Gene:
TNNI1
Ensembl Gene ID:
ENSAPLG00000021735
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042967
3450278 - 3454610
4333