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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_27_3468012_3469416_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3468012 - 3469416
Intron Length:
1405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCCGTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
TACTGTCTGACC
Flanking Amino Acid:
AAEKVIGAGKSWHKSCFRCA
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.8
84.2
26.4
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
71.1
0.47
0.8
64.8
30.8
Minor 5ss
33.8
-1.8
2.9
42.8
44.4
Minor BPS
46.3
-0.3
2
58.88
40.6

Associated Gene:

Gene:
CSRP1
Ensembl Gene ID:
ENSAPLG00000012039
Chromosome:
27

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012529
3467249 - 3473472
6224